The R Journal: article published in 2010, volume 2:1

Online Reproducible Research: An Application to Multivariate Analysis of Bacterial DNA Fingerprint Data
Jean Thioulouse, Claire Valiente-Moro and Lionel Zenner , The R Journal (2010) 2:1, pages 44-52.

Abstract This paper presents an example of online reproducible multivariate data analysis. This example is based on a web page providing an online computing facility on a server. HTML forms contain editable R code snippets that can be executed in any web browser thanks to the Rweb software. The example is based on the multivariate analysis of DNA fingerprints of the internal bacterial flora of the poultry red mite Dermanyssus gallinae. Several multivariate data analysis methods from the ade4 package are used to compare the fingerprints of mite pools coming from various poultry farms. All the computations and graphical displays can be redone interactively and further explored online, using only a web browser. Statistical methods are detailed in the duality diagram framework, and a discussion about online reproducibility is initiated.

CRAN packages: ade4, seqinr, ade4, vegan, CGIwithR, R2HTML
CRAN Task Views implied by cited CRAN packages: Environmetrics, Multivariate, Psychometrics, Spatial, Graphics, Genetics, Phylogenetics, ReproducibleResearch

@article{RJ-2010-002,
  author = {Jean Thioulouse and Claire Valiente-Moro and Lionel Zenner},
  title = {{Online Reproducible Research: An Application to Multivariate
          Analysis of Bacterial DNA Fingerprint Data}},
  year = {2010},
  journal = {{The R Journal}},
  doi = {10.32614/RJ-2010-002},
  url = {https://doi.org/10.32614/RJ-2010-002},
  pages = {44--52},
  volume = {2},
  number = {1}
}