The ‘Changes on CRAN’ article from the 2011-1 issue.
BLR, BMS, BaBooN, BayesDA, BayesX, Bmix, LaplacesDemon, SampleSizeMeans, SampleSizeProportions, abc, bayespack, bbemkr, bclust, bfp, bisoreg, bnlearn, catnet, cudaBayesreg, dclone, ebdbNet, factorQR, gausspred, mlogitBMA, mombf, predbayescor, predmixcor, rWMBAT, sbgcop, spikeSlabGAM, varSelectIP.
ChemoSpec, ChemometricsWithR, ChemometricsWithRData.
HDclassif, MOCCA, MetabolAnalyze, SDisc, clusterCons, dpmixsim, edci, fastcluster, isa2, isopam, kernlab, kml, kml3d, lcmm, mixsmsn, movMF, optpart, pdfCluster, profdpm, sigclust, sparcl.
CompQuadForm, FAdist, GB2, GeneralizedHyperbolic, HI, PearsonDS\(^*\), RMTstat, SkewHyperbolic, distrEllipse, emg, gaussDiff, hyperdirichlet, loglognorm, mgpd, movMF, mvtBinaryEP, poibin, poilog, poistweedie, reliaR\(^*\), skellam, spd, stabledist, trapezoid.
apt, censReg, erer, ordinal.
diveMove, wq.
RTAQ.
RInside, doSMP.
CORElearn, Cubist, ahaz, ncvreg, rminer.
RcppDE, alabama, cmaes, dclone, neldermead, pso, rneos, soma.
PHYLOGR, RBrownie, TreePar, diversitree.
irtoys, mpt, qgraph, semPLS.
Geneland, adehabitatHR, adehabitatHS, adehabitatLT, adehabitatMA, gdistance, rgeos.
Biograph, NADA, PermAlgo, bujar, compeir, concreg, crrSC, frailtyHL, globalboosttest, msSurv, plsRcox, powerSurvEpi, risksetROC, survAUC, survJamda, survivalBIV.
FitARMA, Rssa, egarch, fastVAR, lubridate, season.
(* = core package)
An interpretation of the ADM method — automated detection algorithm. Author: Tomas William Fitzgerald.
Statistical Tools for Measuring Agreement. Author: Yue Yu and Lawrence Lin.
Data extraction tool from annotations files. Author: Nicolas Cagnard.
Business and Customer Analytics. Author: Dan Putler.
Bayesian Bootstrap Predictive Mean Matching — Multiple and single imputation for discrete data. Author: Florian Meinfelder. In view: Bayesian.
Bessel Functions Computations and Approximations. Author: Martin Maechler.
Creates an interface to BiGG database, provides a framework for simulation and produces flux graphs. Author: Anand K. Gavai.
Find biomarkers in two-class discrimination problems. Authors: Ron Wehrens and Pietro Franceschi.
Explore life histories. Author: Frans Willekens. In view: Survival.
Correlation classification method (CCM). Authors: Garrett M. Dancik and Yuanbin Ru.
Statistical inference of C- and D-vine copulas. Authors: Ulf Schepsmeier and Eike Christian Brechmann.
Causal Genetic Analysis. Author: Peter Lipman.
CITation ANalysis toolpack. Author: Marek Gagolewski.
Sample Size Estimation Functions for Cluster Randomized Trials. Author: Michael A Rotondi.
Exploratory Chemometrics for Spectroscopy. Authors: Bryan A. Hanson DePauw University, Greencastle Indiana USA. In view: ChemPhys.
Chemometrics with R — Multivariate Data Analysis in the Natural Sciences and Life Sciences. Author: Ron Wehrens. In view: ChemPhys.
Data for package ChemometricsWithR. Author: Ron Wehrens. In view: ChemPhys.
Useful libraries for building a Java based GUI under R. Author: Kornelius Rohmeyer.
Estimate diagnostic accuracy (sensitivity, specificity, etc) and agreement statistics when one test is conducted on only a subsample of specimens. Authors: Hormuzd A. Katki and David W. Edelstein.
Implements a pathwise algorithm for covariance selection. Author: Vijay Krishnamurthy.
Rule- and Instance-Based Regression Modeling. Authors: Max Kuhn, Steve Weston, and Chris Keefer. C code for Cubist by R. Quinlan. In view: MachineLearning.
Consensus genetic maps. Author: Jeffrey Endelman.
DALY Calculator — A GUI for stochastic DALY calculation in R. Authors: Brecht Devleesschauwer, Arie Havelaar, Juanita Haagsma, Nicolas Praet, and Niko Speybroeck.
Denoising Algorithm based on Relevance network Topology. Authors: Yan Jiaoa and Andrew E. Teschendorff.
Example data set for DART package. Author: Yan Jiao.
Methods of distance-based gene set functional enrichment analysis. Authors: Li Jin and Huang Meilin.
Differential Identification using Mixture Ensemble. Author: Cenny Taslim, with contributions from Dustin Potter, Abbasali Khalili, and Shili Lin.
Analysis of Discretely Observed linear Birth-And-Death(-and-immigration) Markov Chains. Author: Charles Doss.
A Deducer plugin for moderated multiple regressions and simple slopes analysis. Authors: Alberto Mirisola, Luciano Seta, Manuel Gentile, and Dario La Guardia.
Neuwirth miscellaneous. Author: Erich Neuwirth.
Power Analysis and Sample Size Calculation. Authors: Amadou Gaye and Paul Burton.
Displays Euclidean Maps. Author: Elisa Frutos Bernal.
Distributions that are sometimes used in hydrology. Author: François Aucoin. In view: Distributions.
Maximum Likelihood and Bayesian Estimation of Univariate Probability Distributions. Author: François Aucoin.
Download financial data from FRB’s website. Author: Shinichi Takayanagi.
Model-Based Clustering in the Fisher Discriminative Subspace. Authors: J. Loisel, T. Souvannarath, M. Tchebanenko, C. Bouveyron, and C. Brunet.
Hive Plots of R Package Function Calls. Author: Bryan A. Hanson.
A genetic algorithm approach to determine stratum boundaries and sample sizes of each stratum in stratified sampling. Authors: Sebnem Er, Timur Keskinturk, and Charlie Daly.
Gene Association Network-based Pathway Analysis. Authors: Zhaoyuan Fang, Weidong Tian, and Hongbin Ji.
The GANPA Datasets Package. Authors: Zhaoyuan Fang, Weidong Tian, and Hongbin Ji.
Generalized Beta Distribution of the Second Kind: properties, likelihood, estimation. Authors: Monique Graf and Desislava Nedyalkova. In view: Distributions.
R functions for Generalized Simulated Annealing. Authors: Sylvain Gubian, Yang Xiang, Brian Suomela, and Julia Hoeng.
A multiplatform GUI for drawing customizable graphs in R. Author: Maxime Hervé.
Uses Grieg-Smith method on 2 dimensional spatial data. Author: Brian McGuire.
Diagnostic tools for two-level normal hierarchical linear models. Author: Adam Loy.
Heligman Pollard mortality model parameter estimation using Bayesian Melding with Incremental Mixture Importance Sampling. Author: David J Sharrow.
Joint meta-analysis of diagnostic test sensitivity and specificity with or without a gold standard reference test. Authors: Ian Schiller and Nandini Dendukuri.
High Dimensional Discriminant Analysis. Author: António Pedro Duarte Silva.
Functions facilitating the estimation of the Intraclass Correlation Coefficient. Author: Matthew Wolak.
Identification and Quantification of Metabolites by Using 1D 1H NMR FID. Author: XuSong.
Facilitates image analysis for social scientists. Author: Solomon Messing.
Nonparametric tests of independence between random vectors. Authors: P Lafaye de Micheaux and M Bilodeau.
Infine-dimensional model (IDM) to analyse phenotypic variation in growth trajectories. Authors: Anna Kuparinen and Mats
Interpolation of amino acid sequences. Author: Dominik Heider.
Estimates diet contributions from isotopic sources using JAGS. Authors: Jack Hopkins and Jake Ferguson.
Johnson Transformation. Author: Edgar Santos Fernandez.
Fractal Image Data Generator. Author: Mehmet Suzen.
Kriging-based Inversion for Deterministic and Noisy Computer Experiments. Authors: Victor Picheny and David Ginsbourger.
Check the power of a statistical model. Author: Issei Kurahashi.
Latent Class Analysis (LCA) with familial dependence in extended pedigrees. Authors: Arafat Tayeb, Alexandre Bureau, and Aurelie Labbe.
Software for Bayesian Inference. Author: Byron Hall. In view: Bayesian.
Functions and datasets to accompany the book “Le logiciel R: Maîtriser le langage, Effectuer des analyses statistiques” (in French). Authors: Lafaye de Micheaux Pierre, Drouilhet Rémy, and Liquet Benoit.
Quantitative analysis of MALDI-TOF MS data. Author: Sebastian Gibb.
Smoothed age profile estimation. Author: Roberto Impicciatore.
Multidimensional Adaptive Testing (MAT). Author: Seung W. Choi.
Detect gene-gene interactions using multifactor dimensionality reduction. Author: Stacey Winham.
Multivariate Exponentially Weighted Moving Average (MEWMA) Control Chart. Author: Edgar Santos Fernandez.
General Markov Chain Monte Carlo for Bayesian Inference using adaptive Metropolis-Hastings sampling. Author: Corey Chivers.
Bayesian Model Search and Multilevel Inference for SNP Association Studies. Author: Melanie Wilson.
MLPA analysis to detect gains and loses in genes. Authors: Alejandro Cáceres and Juan R González.
Data and functions for the book “Modern Statistical Graphics”. Author: Yihui Xie.
Munich Franz-Josef-Strauss Airport Pattern Analysis. Authors: The students of the “Advanced R Programming Course”: Basil Abou El-Komboz, Andreas Bender, Abdelilah El Hadad, Laura Roman Hornung, Max Hughes-Brandl, Christian Lindenlaub, Christina Riedel, Ariane Straub, Florian Wickler, under the supervision of Manuel Eugster and Torsten Hothorn.
An Introduction to Applied Multivariate Analysis with R. Authors: Brian S. Everitt and Torsten Hothorn.
Meta-analysis of genome-wide SNP association results. Authors: Maksim Struchalin and Yurii Aulchenko.
Meta-analysis in the Dimension Reduction of Genomic data. Author: Don Kang.
Quantitative Quality Assessment for Inclusion/Exclusion Criteria of Genomic Meta-Analysis. Author: Don Kang.
Sample quality analysis and sample control analysis. Authors: Ling Teng, Chao Chen, and Chunyu Liu.
Functions for analysis of method comparison studies. Authors: Bendix Carstensen and Lyle Gurrin.
Implementation of the Well-Known Game to Clear Bombs from a Given Field (Matrix). Author: Roland Rau.
The NBP Negative Binomial Model for Assessing Differential Gene Expression from RNA-Seq. Authors: Yanming Di and Daniel W. Schafer, with contributions from Jason S. Cumbie and Jeff H. Chang.
Night and Day Boundary Plot Funtion. Author: Max Hughes-Brandl.
Japanese utility functions and data. Author: Susumu Tanimura.
A set of datasets used in my classes or in the book “Modele liniowe i mieszane w R, wraz z przykładami w analizie danych”. Author: Przemysław Biecek.
Population Size Estimation. Author: Jakub Stoklosa.
Parent Specific DNA Copy Number Estimation. Authors: Hao Chen, Haipeng Xing, and Nancy R. Zhang.
Estimation of the peak-to-trough ratio of a seasonal variation component. Author: Anette Luther Christensen.
Significance analysis of sequencing data based on a Poisson log linear model. Author: Jun Li.
Utility Functions of the Potts Models. Author: Dai Feng.
Assessment of risk prediction models. Authors: Suman Kundu, Yurii S. Aulchenko, A. Cecile, and J.W. Janssens.
Profile Likelihood for a Parameter in Commonly Used Statistical Models. Author: Leena Choi.
Tools for mapping of quantitative traits of genetically related individuals and calculating identity coefficients from a pedigree. Author: Riyan Cheng.
Convert R Graphics to Flash Animations. Authors: Yixuan Qiu and Yihui Xie.
Fit RAD models to biological data. Authors: Piers K Dunstan and Scott D Foster.
Standard Atmosperic profiles. Author: Gionata Biavati.
Search Pubmed, Make bibliographic content analyzable. Author: S. A. Kovalchik.
R Code for MARK Analysis. Author: Jeff Laake.
Mediation Analysis. Authors: Davood Tofighi and David P. MacKinnon.
Obtain, organize, and visualize NCEP weather data. Authors: Michael U. Kemp, with contributions from E. Emiel van Loon, Judy Shamoun-Baranes, and Willem Bouten.
R interface to liboauth. Author: Jeff Gentry.
Non-parametric estimation of ROC curves without Gold Standard Test. Author: Chong Wang.
R based StackExchange client. Author: Jeff Gentry.
Tools for the analysis of trades and quotes in R. Authors: Kris Boudt and Jonathan Cornelissen. In view: Finance.
Fonctions diverses accompagnant l’ouvrage “Aide-memoire de statistique appliquee a la biologie”. Author: Maxime Hervé.
Authors: Patrick Meyer and Sébastien Bigaret.
Rcmdr Plug-In for Business and Customer Analytics. Author: Dan Putler.
R commander Depth Tools Plug-In. Authors: Sara López-Pintado and Aurora Torrente.
Rcpp bindings for the Boost Date Time library. Authors: Dirk Eddelbuettel and Romain François.
Deprecated ‘classic’ Rcpp API. Authors: Dirk Eddelbuettel and Romain François, with contributions by David Reiss, and based on code written during 2005 and 2006 by Dominick Samperi.
Global optimization by differential evolution in C++. Authors: Dirk Eddelbuettel extending DEoptim (by David Ardia, Katharine Mullen, Brian Peterson, Joshua Ulrich) which itself is based on DE-Engine (by Rainer Storn). In view: Optimization.
Detection of global group effect in microarrays data. Author: Klaus Jung.
R interface to the idmclib library. Authors: Antonio, Fabio Di Narzo.
Using graphs as a navigational infrastructure. Authors: Adrian R. Waddell and R. Wayne Oldford.
Some image data used in the RnavGraph package demos. Authors: Adrian R. Waddell and R. Wayne Oldford.
Methods for robust rank aggregation. Authors: Raivo Kolde and Sven Laur.
A web server interface for R. Author: Jeffrey Horner.
A collection of methods for singular spectrum analysis. Author: Anton Korobeynikov. In view: TimeSeries.
GUI Tool for Data Management like SPSS or Stata. Author: Masahiro Hayashi.
SPARQL client. Author: Willem Robert van Hage.
Statistical package for species richness estimation. Author: Ji-Ping Wang.
State space models. Author: Dave Zes.
SVMMaj algorithm. Authors: Hoksan Yip, Patrick J.F. Groenen, and Georgi Nalbantov.
Analysis of functional and phylogenetic patterns in metacommunities. Author: Vanderlei Júlio Debastiani.
Optimal stratification of sampling frames for multipurpose sampling surveys. Author: Giulio Barcaroli.
Semiparametric Bivariate Probit Modelling. Authors: Giampiero Marra and Rosalba Radice.
Simulation of Diffusion Processes. Authors: Boukhetala Kamal and Guidoum Arsalane.
Graphical User Interface for Simulation of Diffusion Processes. Authors: Boukhetala Kamal and Guidoum Arsalane.
Correspondence and Simultaneous Analysis. Authors: Amaya Zarraga and Beatriz Goitisolo.
Six Sigma Tools for Quality and Process Improvement. Authors: Emilio López, Andrés Redchuk, Javier M.Moguerza.
Fit Mixtures of Archetype Species. Authors: Piers K Dunstan, Scott D Foster and Ross Darnell.
Test for A+B Traditional Escalation Rule. Author: Eun-Kyung Lee.
Time Series Database Interface extension to connect with getSymbols. Author: Paul Gilbert.
Time Series Database Interface extension to connect to spreadsheets. Author: Paul Gilbert.
Time Series Database Interface extension to connect to zip files. Author: Paul Gilbert.
Earthquake Traveltime Calculations for 1-D Earth Models. Authors: Jake Anderson and Jonathan Lees.
Two-Phase Independence. Author: James Dai.
Conditional logistic regression: A two-step estimation method. Authors: Radu V. Craiu, Thierry Duchesne, Daniel Fortin and Sophie Baillargeon.
Variational Bayesian mixture models. Author: Pierrick Bruneau.
Generate high-resolution Venn and Euler plots. Author: Hanbo Chen.
Excel Connector for R. Author: Mirai Solutions GmbH.
JAR dependencies for the XLConnect package. Author: Mirai Solutions GmbH.
Text Analysis by Yahoo! Japan Develper Network. Author: Yohei Sato.
The Analysis of Biological Data. Authors: Kevin M. Middleton and Randall Pruim.
Home Range Estimation. Author: Clément Calenge, contributions from Scott Fortmann-Roe. In view: Spatial.
Analysis of habitat selection by animals. Author: Clément Calenge, contributions from Mathieu Basille. In view: Spatial.
Analysis of animal movements. Author: Clément Calenge, contributions from Stéphane Dray and Manuela Royer. In view: Spatial.
Tools to Deal with Raster Maps. Author: Clément Calenge, contributions from Mathieu Basille. In view: Spatial.
Estimation, Diagnostic and Forecasting Functions for ARFIMA models. Authors: Javier Contreras-Reyes, Georg M. Goerg, and Wilfredo Palma.
Agricultural datasets. Author: Kevin Wright.
Regularization for semiparametric additive hazards regression. Author: Anders Gorst-Rasmussen. In view: MachineLearning.
Allan Variance Analysis. Author: Javier Hidalgo Carrió.
Asymmetric Price Transmission. Author: Changyou Sun. In view: Econometrics.
Visualizing Association Rules and Frequent Itemsets. Authors: Michael Hahsler and Sudheer Chelluboina.
Bounds for Accounting Populations. Author: Glen Meeden.
Baseline Correction of Spectra. Authors: Kristian Hovde Liland and Bjørn-Helge Mevik.
Recover a Basic Space from Issue Scales. Authors: Keith Poole, Howard Rosenthal, Jeffrey Lewis, James Lo, and Royce Carroll.
Bayesian Projection of Life Expectancy. Authors: Hana Ševčíková, Adrian Raftery; original WinBugs code written by Jennifer Chunn.
Bayesian quantile regression. Authors: Dries F. Benoit, Rahim Al-Hamzawi, Keming Yu, and Dirk Van den Poel.
Numerical Integration for Bayesian Inference. Authors: Alan Genz (BAYESPACK Fortran source code) and Bornkamp (R interface and minor adaptions in Fortran source code). In view: Bayesian.
Hierarchical Bayesian analysis of ecological count data. Authors: Zachariah Gompert and James A. Fordyce.
Gaussian Mixture Modeling algorithms, including the belief-based mixture modeling. Author: Przemysław Biecek and Ewa Szczurek.
Analysis Toolbox For Bipartite Graphs. Author: Ingo Vogt.
Bayesian Isotonic Regression with Bernstein Polynomials. Author: S. McKay Curtis. In view: Bayesian.
Analyze biotic homogenization of landscapes. Author: David J. Harris.
Mediation analysis with missing data using bootstrap. Authors: Zhiyong Zhang and Lijuan Wang.
Basis Selection from Multiple Libraries. Authors: Junqing Wu, Jeff Sklar, Yuedong Wang and Wendy Meiring.
Gradient Boosting. Author: Zhu Wang.
Buckley-James Regression for Survival Data with High-Dimensional Covariates. Author: Zhu Wang. In view: Survival.
Infering large-scale gene networks with C3NET. Authors: Gokmen Altay and Frank Emmert-Streib.
Séries temporelles avec R — Méthodes et cas. Author: Yves Aragon.
Conditional expectatation manifolds. Author: Samuel Gerber.
Comparison of groups. Authors: Bill Pikounis and John Oleynick.
Contains funcions that run various single and multiple changepoint methods. Authors: Rebecca Killick and Idris A. Eckley.
Assigning tumor samples to CIT Breast Cancer Molecular Subtypes from gene expression data. Authors: Laetitia Marisa, Aurélien de Reyniès, Mickael Guedj.
Constrained \(L_1\)-minimization for Inverse (covariance) Matrix Estimation. Authors: T. Tony Cai, Weidong Liu and Xi (Rossi) Luo.
Canonical Non-symmetrical Correspondence Analysis in R. Authors: Ana Belén Nieto Librero, Priscila Willems, Purificación Galindo Villardón.
Event-specific incidence rates for competing risks data. Authors: Nadine Grambauer and Andreas Neudecker. In view: Survival.
Concordance regression. Authors: R by Meinhard Ploner, Daniela Dunkler and Georg Heinze; Fortran by Georg Heinze. In view: Survival.
Basic Copula Functions. Author: William H. Asquith.
Estimation of Distribution Algorithms Based on Copula Theory. Authors: Yasser González-Fernández and Marta Soto.
COSSO, adaptive COSSO, variable selection for nonparametric smoothing spline models. Author: Hao Helen Zhang.
Competing risks regression for Stratified and Clustered data. Authors: Bingqing Zhou and Aurélien Latouche. In view: Survival.
Statistical Tools to Analyze Your Darts Game. Author: Ryan Tibshirani.
Human readable data presentation. Author: Christofer Backlin.
Provides a graphical user interface to connect with databases that use MySQL. Authors: Dason Kurkiewicz, Heike Hofmann, Ulrike Genschel.
Goodness-of-fit and two sample comparison tests using sample entropy. Authors: Jeffrey C. Miecznikowski, Lori A. Shepherd, and Albert Vexler.
Deductive correction of simple rounding, typing and sign errors. Authors: Mark van der Loo, Edwin de Jonge, and Sander Scholtus.
Depth Tools. Authors: Sara López-Pintado and Aurora Torrente.
A Graphical User Interface (GUI) to process and visualize tree-ring data using R. Author: Filipe Campelo.
EMF graphics output device. Authors: Philip Johnson, with code from R-core.
Derivative-free Optimization. Author: Ravi Varadhan.
Statistics: What’s the Difference?. Authors: Andrew Gelman, Vincent Dorie, Val Chan, and Daniel Lee.
Comparative phylogenetic tests of diversification. Authors: Richard G. FitzJohn, with GeoSSE by Emma E. Goldberg. In view: Phylogenetics.
Generalized Dynamic Linear Modeler. Author: Cyrille Szymanski.
Dependency Modeling Toolkit. Authors: Leo Lahti and Olli-Pekka Huovilainen.
Foreach parallel adaptor for the revoIPC package. Author: Revolution Analytics. In view: HighPerformanceComputing.
Plots of the Empirical Attainment Function. Authors: Carlos Fonseca, Luís Paquete, Thomas Stützle, Manuel López-Ibáñez and Marco Chiarandini.
Parsing and manipulating edit rules. Authors: Edwin de Jonge and Mark van der Loo.
Translate integers into English. Authors: John Fox and Bill Venables.
Enrichment assessment of virtual screening approaches. Author: Hiroaki Yabuuchi.
EPoC (Endogenous Perturbation analysis of Cancer). Authors: Rebecka Jornsten, Tobias Abenius, and Sven Nelander.
Empirical Research in Economics with R. Author: Changyou Sun. In view: Econometrics.
User-specified terms for the statnet suite of packages. Authors: Mark S. Handcock, David R. Hunter, Carter T. Butts, Steven M. Goodreau, Martina Morris and Pavel N. Krivitsky.
esotericR articles from lemnica.com. Author: Jeffrey A. Ryan.
Additional Funnel Plot Augmentations. Authors: Dean Langan, Alexander Sutton, Julian PT Higgins, and Walter Gregory.
Eyetracking Helper Functions. Author: Ryan M. Hope.
Thin wrapper for the Factual.com server API. Author: Ethan McCallum.
Fast implementations to estimate Vector Autoregressive models and Vector Autoregressive models with Exogenous Inputs. Author: Jeffrey Wong. In view: TimeSeries.
Fast hierarchical clustering routines for R and Python. Author: Daniel Müllner. In view: Cluster.
Fast match() function. Author: Simon Urbanek.
Functional Data Analysis and Utilities for Statistical Computing. Authors: Febrero-Bande, M. and Oviedo de la Fuente, M.
Basic statistical functions for package ff. Author: Edwin de Jonge.
Flux rate calculation from dynamic closed chamber measurements. Authors: Gerald Jurasinski and Franziska Koebsch.
Estimation of fractal dimensions. Authors: Hana Ševčíková, Tilmann Gneiting, and Don Percival.
Frailty Models via H-likelihood. Authors: Il Do HA, Maengseok Noh, and Youngjo Lee. In view: Survival.
Curry, Compose, and other higher-order functions. Author: Peter Danenberg.
Collection of functions for Gaussian quadrature. Author: Frederick Novomestky.
Distances and routes on geographical grids. Author: Jacob van Etten. In view: Spatial.
CoreArray Generic Data Structurs (GDS) R Interface. Author: Xiuwen Zheng.
Performs Address Comparison. Authors: Randall Shane.
Combination of GGplot2 plots into a matrix based on data columns. Authors: Fernando Fuentes and George Ostrouchov.
Fit a penalized constrained continuation ratio model for predicting an ordinal response. Author: Kellie J. Archer.
Testing the additional predictive value of high-dimensional data. Authors: Anne-Laure Boulesteix and Torsten Hothorn. In view: Survival.
Google JSON Data Interpreter for R. Author: Christopher Steven Marcum.
GRAPH Interaction from pathway Topological Environment. Authors: Gabriele Sales, Enrica Calura, and Chiara Romualdi.
Calculate efficiencies of group testing algorithms with correlated responses. Author: Sam Lendle.
Controlling the genome-wide type I error rate in association mapping experiments. Authors: Benjamin Stich, Bettina Müller, and Hans-Peter Piepho.
Hadoop InteractiVE. Authors: Ingo Feinerer and Stefan Theussl.
Functions useful for building physics. Author: Neurobat AG.
Simulation of genomic data in applied genetics. Author: Frank Technow.
Graph-based reconstruction, analyses, and visualization of the KEGG pathways. Author: Chunquan Li.
Interactive web-based scatter plots. Authors: Eleni Chatzimichalia and Conrad Bessant.
Functions to set and get the IEEE rounding mode. Author: Gianluca Amato.
Fill missing values in a data matrix using SVD, SVT, or kNN imputation. Author: Jeffrey Wong.
Information Decomposition of Two-phase Experiments. Authors: Kevin Chang and Katya Ruggiero.
Functions with deSolve solver and C/FORTRAN interfaces to nlme, together with compiled codes. Authors: Yuzhuo Pan and Xiaoyu Yan.
Fast partial SVD by implicitly-restarted Lanczos bidiagonalization. Authors: Jim Baglama and Lothar Reichel.
Isotonic Inference for Circular Data. Author: The implementation in R was done by Sandra Barragan based on the SAS routines written by Miguel A. Fernández.
Approximate probability densities by iterated Laplace Approximations. Author: Bornkamp.
Nonparametric kernel estimation of the distribution function. Bandwidth selection and estimation of related functions. Authors: Alejandro Quintela del Río and Graciela Estévez Pérez.
knn-gcv. Authors: Ernest Liu, Daisy Sun and Aaron Swoboda.
Data sets and functions from the Faculty of Life Sciences, University of Copenhagen. Authors: Claus Ekstrøm, Ib M. Skovgaard, and Torben Martinussen.
\(L_1\) regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Shooting. Author: Tobias Abenius.
Bayesian estimation of latent class models with random effects. Authors: Liangliang Wang and Nandini Dendukuri.
LD LASSO Regression for SNP Association Study. Author: Samuel G. Younkin.
Linear Group Fixed Effects. Authors: Simen Gaure, The Ragnar Frisch Centre for Economic Research.
Tools for Generating, Visualizing, and Analysing Link Communities in Networks. Author: Alex T. Kalinka.
Support for Linear Models. Author: John Curtin.
Linear mixed-effects models with Lasso. Author: Jürg Schelldorfer.
Conditional maximum likelihood estimation in mixed Rasch models. Author: David Preinerstorfer.
Marginal Likelihood Computation via Arrogance Sampling. Author: Benedict Escoto.
Conditional Samplings for Max-Linear Models. Author: Yizao Wang.
Machine Coded Genetic Algorithms for the Real Value Optimization Problems. Author: Mehmet Hakan Satman.
Bayesian Methods for Identifying the Most Harmful Medication Errors. Authors: Sergio Venturini and Jessica Myers.
Multivariate Data Handling with S4 Classes and Sparse Matrices. Author: Peter Solymos.
Functions for multivariate generalized Pareto distribution (MGPD of Type II). Author: Pal Rakonczai. In view: Distributions.
Multiple Hypotheses Testing For Variable Selection. Author: F. Rohart.
Multiple Imputation Plots. Author: Paul Brix.
Combined miRNA- and mRNA-testing. Authors: Stephan Artmann, Klaus Jung, and Tim Beissbarth.
Sub microsecond accurate timing functions. Author: Olaf Mersmann.
Gene region-level testing procedure for SNP data, using the min P test resampling approach. Author: Stefanie Hieke.
Nonparametric Missing Value Imputation using Random Forest. Author: Daniel J. Stekhoven.
Multivariate Nonparametric Statistical Process Control. Authors: Martin Bezener and Peihua Qiu.
Project MOSAIC (mosaic-web.org) math and stats teaching utilities. Authors: Randall Pruim, Daniel Kaplan, and Nicholas Horton.
Models for Analysing Moult Data. Authors: Birgit Erni. Based on models developed by Underhill and Zucchini (1988,1990).
Mixtures of von Mises Fisher Distributions. Authors: Kurt Hornik and Bettina Grün. In views: Cluster, Distributions.
CoWords Method. Author: Daniel Hernando Rodríguez & Campo Elías Pardo.
Nonparametric Estimation for Multistate Models. Authors: Nicole Ferguson, Guy Brock, and Somnath Datta. In view: Survival.
Model-based Sliced Inverse Regression. Author: Luca Scrucca.
Morse-Smale approximation, regression and visualization. Authors: Samuel Gerber, Kristi Potter, and Oliver Ruebel.
Creating MAGE-TAB files using mtcreator. Author: Fabian Grandke.
Variable Importance Analysis with Population Intervention Models. Authors: Stephan Ritter, Alan Hubbard, and Nicholas Jewell.
Multibiplot Analysis in R. Authors: Ana Belén Nieto Librero, Nora Baccala, Purificación Vicente Galindo, and Purificación Galindo Villardon.
Common Multiple Testing Procedures and Gatekeeping Procedures. Authors: Alex Dmitrienko, Eric Nantz, and Gautier Paux, with contributions by Thomas Brechenmacher.
Multivariate meta-analysis and meta-regression. Author: Antonio Gasparrini.
Efficient mixed-level \(k\)-circulant supersaturated designs. Author: B N Mandal.
Near-Isotonic Regression. Authors: Holger Hoefling, Ryan Tibshirani, and Robert Tibshirani.
Tools for graphical inference. Author: Hadley Wickham.
Test of accuracy of as.character() for a numeric input using the
standard arithmetic. Author: Petr Savicky.
Beispieldaten zu “R in a Nutshell” (deutsche Ausgabe). Author: Joseph Adler (Autor des nutshell-Pakets) and Beyer (deutsche Übersetzung und Bearbeitung; ergänzender Code).
Combination of visualization functions for nuclear data using ggplot2 and ggcolpairs. Authors: Fernando Fuentes and George Ostrouchov.
Maximum likelihood tree models for oncogenesis. Authors: Anja von Heydebreck, contributions from Christiane Heiss.
ORCLUS subspace clustering. Author: Gero Szepannek.
Selection and/or Smoothing of Ordinal Predictors. Author: Jan Gertheiss.
Ordinal Dominance Statistics. Author: Jens J. Rogmann.
Significance tests for palaeoenvironmental reconstructions. Author: Richard Telford.
Parametric linkage analysis. Author: Magnus Dehli Vigeland.
Parallel Mutual Information estimation for Gene Network reconstruction. Authors: Gabriele Sales and Chiara Romualdi.
Vectorized Bivariate Normal CDF. Authors: Fortran code by Alan Genz. R code by Brenton Kenkel, based on Adelchi Azzalini’s mnormt package.
Cluster analysis via nonparametric density estimation. Authors: Adelchi Azzalini, Giovanna Menardi and Tiziana Rosolin. In view: Cluster.
Penalized classification using Fisher’s linear discriminant. Author: Daniela Witten.
Flexible Copula Density Estimation with Penalized Hierarchical B-Splines. Author: Christian Schellhase.
Simulation of high-dimensional data and parallelized repeated penalized regression. Authors: L. Waldron, M. Pintilie, C. Huttenhower* and I. Jurisica* (*equal contribution).
An extension of some of the classes in phylobase. Tree objects now support subnodes on branches. Author: J. Conrad Stack.
A complete statistical analysis of MALDI-TOF mass spectrometry proteomics data. Authors: Juliet Ndukum, Mourad Atlas, and Susmita Datta.
Plot a model’s response while varying the values of the predictors. Author: Stephen Milborrow.
Partial least squares Regression for Cox models and related techniques. Authors: Frederic Bertrand, Myriam Maumy-Bertrand, and Nicolas Meyer. In view: Survival.
The Poisson Binomial Distribution. Author: Yili Hong. In view: Distributions.
Practical Numerical Math Functions. Author: Hans W Borchers.
Protein REsidue-level Structural Statistics. Authors: Yuanyuan Huang, Stephen Bonett, and Zhijun Wu.
Data sets for package press. Authors: Yuanyuan Huang, Stephen Bonett, and Zhijun Wu.
Pycnophylactic Interpolation. Author: Chris Brunsdon.
Quality Assurance Toolkit. Author: Andre Duesterhus.
Visualize data as networks. Authors: Sacha Epskamp, Angelique O. J. Cramer, Lourens J. Waldorp, Verena D. Schmittmann, and Denny Borsboom. In view: Psychometrics.
Basic Markovian queueing models. Author: Pedro Canadilla.
CUR decomposition package. Authors: Andras Bodor and Norbert Solymosi.
rChoiceDialogs collection. Authors: Alex Lisovich and Roger Day.
Improved Foreign Function Interface (FFI) and Dynamic Bindings to C Libraries (e.g. OpenGL). Author: Daniel Adler.
Reads mass spectrometry data in Bruker *flex format. Author: Sebastian Gibb.
Reads mass spectrometry data in mzXML format. Authors: Jarek Tuszynski and Sebastian Gibb.
Random univariate and multivariate finite mixture generation. Author: Marko Nagode.
Package for some probability distributions. Authors: Vijay Kumar and Uwe Ligges. In view: Distributions.
A GUI for the reshape2 and plyr packages. Author: Jason Crowley.
Manage Review Logs. Author: Tim Bergsma.
Shared memory parallel framework for multicore machines. Author: Revolution Analytics.
Robust Generalized Additive Model. Authors: Matías Salibián-Barrera, Davor Cubranic, and Azadeh Alimadad.
Interface to Geometry Engine — Open Source (GEOS). Authors: Roger Bivand and Colin Rundel. In view: Spatial.
Species richness estimation and comparison. Author: Jean-Pierre Rossi.
Simpler use of data mining methods (e.g. NN and SVM) in classification and regression. Author: Paulo Cortez. In view: MachineLearning.
XML-RPC Interface to NEOS. Author: Bernhard Pfaff. In view: Optimization.
ROC, Precision-Recall, Convex Hull and other plots. Author: Bob Wheeler.
Plot rpart models. An enhanced version of plot.rpart(). Author:
Stephen Milborrow.
Genomic selection and association analysis. Author: Jeffrey Endelman.
Support for the Resource Description Framework. Author: Egon Willighagen.
Jena libraries for use with rrdf. Author: Egon Willighagen.
Ray Shooting Depth (i.e., RS Depth) functions for bivariate analysis. Authors: Nabil Mustafa, Saurabh Ray, and Mudassir Shabbir.
Manage and manipulate large collections of R objects stored as tape-like files. Author: Miron B. Kursa.
RVM Binary Classification. Author: Robert Lowe.
Grain size analysis, textural classifications and distribuition of uncosolidated sediments. Authors: Maurício Garcia de Camargo, Eliandro Ronael Gilbert, Leonardo Sandrini-Neto.
Enhanced S3-Based Programming. Author: Charlotte Maia.
Fast load variables. Author: Gergely Daróczi.
Scale regression coefficients. Author: Sandrah P. Eckel.
Transcript-based unit tests that are easy to create and maintain. Author: Tony Plate.
A set of tools for residential segregation research. Authors: Seong-Yun Hong, David O’Sullivan.
Stochastic Frontier Analysis. Authors: Ariane Straub, under the supervision of Torsten Hothorn.
Side Channel Attack. Authors: Liran Lerman, Gianluca Bontempi, and Olivier Markowitch.
Simultaneous Confidence Intervals and Adjusted \(p\)-values for Diversity Indices. Author: Ralph Scherer.
Skills in Knowledge Space Theory. Author: Angela Pilhoefer.
A simple Monte Carlo optimizer using adaptive coordinate sampling. Author: Juan David Velásquez.
Social Network-Analysis On Relational Tables. Authors: Eugene Dubossarsky and Mark Norrie.
General-purpose optimisation with the Self-Organising Migrating Algorithm. Author: Jon Clayden; based on the work of Ivan Zelinka. In view: Optimization.
Visualisation of hexagonal Kohonen maps. Authors: Benjamin Schulz and Andreas Dominik.
An R client for the OGC Sensor Observation Service. Author: Daniel Nüst.
Implements The Sequential Predictions Algorithm. Author: Mark Culp.
Spatial and Phylogenetic Analysis of Community Diversity. Authors: Jonathan Eastman, Timothy Paine, and Olivier Hardy.
Semi Parametric Distribution. Author: Alexios Ghalanos. In view: Distributions.
A GUI based importing and filtering tool. Author: Ilhami Visne.
speedR’s table filter library. Author: Ilhami Visne.
Libraries (jars) for speedR. Author: Ilhami Visne.
Compute SPI index. Author: Josemir Neves.
Bayesian variable selection and model choice for generalized additive mixed models. Author: Fabian Scheipl. In view: Bayesian.
Semiparametric proportional odds rate model. Authors: Zhong Guan and Cheng Peng.
Selection Response Analysis. Author: Arnaud Le Rouzic.
Stable Distribution Functions. Authors: Diethelm Wuertz, Martin Maechler and Rmetrics core team members. In view: Distributions.
Subpopulation Treatment Effect Pattern Plot (STEPP). Author: Wai-ki Yip, with contributions from Ann Lazar, David Zahrieh, Chip Cole, Ann Lazar, Marco Bonetti, and Richard Gelber.
Implements the supervised multidimensional scaling (superMDS) proposal of Witten and Tibshirani (2011). Author: Daniela M. Witten.
Estimators of prediction accuracy for time-to-event data. Authors: Sergej Potapov, Werner Adler and Matthias Schmid. In view: Survival.
Estimation of the Bivariate Distribution Function. Authors: Ana Moreira and Luis Meira-Machado. In view: Survival.
Interfaces to various state-of-art SVD and eigensolvers. Author: Anton Korobeynikov.
Analysis and visualization of high-dimensional data in respect to sample annotations. Author: Martin Lauss.
Tableplot, a visualization of large statistical datasets. Authors: Martijn Tennekes and Edwin de Jonge.
Threshold exceedences and multivariate extremes. Authors: Harry Southworth and Janet E. Heffernan.
Inverse Regression for Text Analysis. Author: Matt Taddy.
Time-ordered and time-aggregated network analyses. Author: Benjamin Blonder.
Text Mining Distributed Corpus Plug-In. Authors: Ingo Feinerer and Stefan Theussl.
Targeted Maximum Likelihood Estimation of additive treatment effect. Author: Susan Gruber, in collaboration with Mark van der Laan.
Functions for Econometrics Output. Author: J. Anthony Cookson.
Track Objects. Author: Tony Plate.
The Trapezoidal Distribution. Author: Jeremy Thoms Hetzel. In view: Distributions.
Estimating and plotting the centre of mass of a tree. Author: Marco Bascietto.
Fast, simple RPC controller for R. Author: Miron B. Kursa.
Two-stage cluster sample bootstrap algorithm. Author: Patrick Zimmerman.
udunits-2 bindings for R. Author: James Hiebert.
You didn’t know you didn’t know? Author: Matthew Dowle.
Objective Bayes Model Selection. Authors: Gopal, V. and Novelo, L. L. and Casella, G. In view: Bayesian.
Computation of Confidence Intervals for Variance Components of Mixed Models in R. Authors: Civit, S., Vilardell, M., Hess, A., Matthew, Z., Ge, Y., Caballe, A.
Multivariate Dependence Modeling with Vines. Authors: Yasser González-Fernández and Marta Soto.
A few functions to visualize statistical circumstances. Authors: Thomas Roth and Etienne Stockhausen.
Methods and applications related to Voronoi tessellations. Authors: Christopher D. Barr, Travis A. Gerke, and David M. Diez.
Useful functions for visual word recognition research. Author: Emmanuel Keuleers.
Wavelet routine for multiple correlation. Author: Javier Fernandez-Macho (UPV/EHU).
HTML 5 Websocket Interface for R. Author: B. W. Lewis.
Weighting and Weighted Statistics. Author: Josh Pasek.
Basic text formatting using xterm escape sequences. Author: Christofer Backlin.
U.S. ZIP Code database. Author: Jeffrey Breen.
The following packages which were previously double-hosted on CRAN and Bioconductor were moved to the Archive, and are now solely available from Bioconductor: LMGene, gene2pathway, genefu, graph, minet, multtest, survcomp, vbmp.
The following packages were moved to the Archive: EMC, EMCC, EffectiveDose, FunctSNP, G1DBN, ISA, PermuteNGS, RSeqMeth, SMC, cxxPack, distributions, elec, formula.tools, hierfstat, muscor, pARccs, ripa, ris, sigma2tools, tossm, tradeCosts.
The following packages were resurrected from the Archive: NADA, glmc, ifa, ipptoolbox, locfdr, nparcomp, ramps, risksetROC, rv.
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For attribution, please cite this work as
Hornik & Zeileis, "Changes on CRAN", The R Journal, 2011
BibTeX citation
@article{RJ-2011-1-cran,
author = {Hornik, Kurt and Zeileis, Achim},
title = {Changes on CRAN},
journal = {The R Journal},
year = {2011},
note = {https://rjournal.github.io/},
volume = {3},
issue = {1},
issn = {2073-4859},
pages = {89-100}
}