Function reference • rj

Primarily AE article management functions

Functions needed in the AE workflow

match_keywords(): Find reviewers through keywords matching

add_reviewer(): Invite an reviewer

decline_reviewer() agree_reviewer() abandon_reviewer(): Update reviewer's response to invite

add_review(): Add the review file received from the reviewer

list_reviewers() reviewer_status(): Summarise reviewers' progression of an article

update_status(): Update the article status

Primarily Editor article management functions

Functions to assist the Editors handle submissions

ae_workload() get_AE(): Check the number of articles an AE is currently working on

add_ae(): Add AE to the DESCRIPTION

update_status(): Update the article status

reject() reject_format() accept() withdraw() major_revision() minor_revision() check_in_submission_folder(): Accept, reject, or withdraw an article

list_reviewers() reviewer_status(): Summarise reviewers' progression of an article

summarise_articles() get_assignments() get_unassigned() find_articles() get_latest(): Summarise editors current in-tray

tabulate_articles(): Tabulate article descriptions

reviewer_summary(): Summarise the reviewer's agree/decline ratio based on past invites

Primarily Editor-in-Chief functions

Functions to assist the EiC extract new submissions, build the article folder

get_submissions(): Download submissions.

acknowledge_submission(): Send submission acknowledgements

acknowledge_submission_text(): Create an acknowledgement email in correspondence folder

acknowledge_revision(): Send revision received acknowledgement

online_metadata(): Generate metadata needed for website.

active_articles() accepted_articles(): List articles.

get_accepted_but_not_online(): Get articles to go online

author_emails(): Extract email from leading author of an issue for emailing

Utilities

Vectors of valid status

valid_status: A list of all valid statuses.

valid_reviewer_status: A list of all valid reviewer statuses.

Build an issue

make_proof(): Make a proof of an issue

publish_article(): Publish an individual article

publish_issue(): Publish an issue

publish_news(): Publish a news article

Misc

AEs() detect_AE() AE() is_AE(): Associate editor (AE) functions

actionable_articles(): Show articles that require attention with the corresponding action

address(): An S3 class to represent email addresses.

article() as.article(): S3 class for article objects

build_latex(): Build article from LaTeX

corr_author(): Extract corresponding author from an article

draft_acknowledge_submissions(): Send submission acknowledgement drafts

email_template(): Send an email template.

email_text(): Generate an email template.

filter_status(): Find articles with a given status.

future_ids(): Generate a new id value.

get_article_keywords(): Extract keywords from a submitted article

get_articles_path(): Get the directory of the articles repository, either as set by set_articles_path() or using git to determine repository root

get_md_from_pdf(): Get metadata from a PDF file

get_reviewer_keywords(): Extract keywords from reviewer list

git_user(): Detect user name and e-mail from GIT

invite_reviewers() invite_reviewer(): Invite reviewer(s).

new_id(): Generate a new id value.

online_metadata_for_article(): Generate metadata for one article.

parse_address_list(): Parse a string into a rfc822 address list.

get_accepted_articles() draft_proofing() proofing_article() proofing_article_text(): Functions for proofing articles

report(): Generate a status report.

rj: R Journal Package

set_articles_path(): Set the directory of the articles repository

article_status_plot(): Generates a status plot for articles submitted in the last few years.

time_to_accept_plot(): Generates a plot of acceptance times for articles published in the last few years.