Articles published in the December 2022 issue
Editorial
Catherine Hurley 4
knitrdata: A Tool for Creating Standalone Rmarkdown Source Documents
David M. Kaplan 6
netgwas: An R Package for Network-Based Genome Wide Association Studies
Pariya Behrouzi, Danny Arends and Ernst C. Wit 18
robslopes: Efficient Computation of the (Repeated) Median Slope
Jakob Raymaekers 38
Generalized Mosaic Plots in the ggplot2 Framework
Haley Jeppson and Heike Hofmann 50
A Study in Reproducibility: The Congruent Matching Cells Algorithm and cmcR Package
Joseph Zemmels, Susan VanderPlas and Heike Hofmann 79
Bootstrapping Clustered Data in R using lmeresampler
Adam Loy and Jenna Korobova 103
DGLMExtPois: Advances in Dealing with Over and Under-dispersion in a Double GLM Framework
Antonio J. Sáez-Castillo, Antonio Conde-Sánchez and Francisco Martínez 121
Making Provenance Work for You
Barbara Lerner, Emery Boose, Orenna Brand, Aaron M. Ellison, Elizabeth Fong, Matthew Lau, Khanh Ngo, Thomas Pasquier, Luis A. Perez, Margo Seltzer, Rose Sheehan and Joseph Wonsil 141
remap: Regionalized Models with Spatially Smooth Predictions
Jadon Wagstaff and Brennan Bean 160
HostSwitch: An R Package to Simulate the Extent of Host-Switching by a Consumer
Valeria Trivellone, Sabrina B. L. Araujo and Bernd Panassiti 179
OTrecod: An R Package for Data Fusion using Optimal Transportation Theory
Gregory Guernec, Valerie Gares, Jeremy Omer, Philippe Saint-Pierre and Nicolas Savy 195
populR: a Package for Population Downscaling in R
Marios Batsaris and Dimitris Kavroudakis 223
dycdtools: an R Package for Assisting Calibration and Visualising Outputs of an Aquatic Ecosystem Model
Songyan Yu, Christopher G. McBride, Marieke A. Frassl, Matthew R. Hipsey and David P. Hamilton 235
SurvMetrics: An R package for Predictive Evaluation Metrics in Survival Analysis
Hanpu Zhou, Hong Wang*, Sizheng Wang and Yi Zou 252
Limitations in Detecting Multicollinearity due to Scaling Issues in the mcvis Package
Roman Salmeron Gomez, Catalina B. Garcia Garcia, Ainara Rodriguez Sanchez and Claudia Garcia Garcia 264
ppseq: An R Package for Sequential Predictive Probability Monitoring
Emily C. Zabor, Brian P. Hobbs and Michael J. Kane 280
pCODE: Estimating Parameters of ODE Models
Haixu Wang and Jiguo Cao 291
TreeSearch: Morphological Phylogenetic Analysis in R
Martin R. Smith 305
The openVA Toolkit for Verbal Autopsies
Zehang Richard Li, Jason Thomas, Eungang Choi, Tyler H. McCormick and Samuel J Clark 316
BayesPPD: An R Package for Bayesian Sample Size Determination Using the Power and Normalized Power Prior for Generalized Linear Models
Yueqi Shen, Matthew A. Psioda and Joseph G. Ibrahim 335
Bioconductor Notes
Maria Doyle and Bioconductor Core Developer Team 352
Changes on CRAN
Kurt Hornik, Uwe Ligges and Achim Zeileis 356
News from the Forwards Taskforce
Heather Turner 358
Changes in R
Tomas Kalibera, Sebastian Meyer and Kurt Hornik 361
R Foundation News
Torsten Hothorn 365